diff --git a/Source/Tools/Flax.Build/Build/NativeCpp/Builder.NativeCpp.cs b/Source/Tools/Flax.Build/Build/NativeCpp/Builder.NativeCpp.cs
index ee61da013..e23cad4d4 100644
--- a/Source/Tools/Flax.Build/Build/NativeCpp/Builder.NativeCpp.cs
+++ b/Source/Tools/Flax.Build/Build/NativeCpp/Builder.NativeCpp.cs
@@ -500,7 +500,7 @@ namespace Flax.Build
                     }
 
                     // Compile C++ file with binary module (only for first module in the binary module to prevent multiple implementations)
-                    if (buildData.BinaryModules.FirstOrDefault(x => x.Key == module.BinaryModuleName)?.First() == module)
+                    if (buildData.BinaryModules.FirstOrDefault(x => x.Key == module.BinaryModuleName)?.First(x => !(x is DepsModule || x is HeaderOnlyModule)) == module)
                     {
                         var project = GetModuleProject(module, buildData);
                         var binaryModuleSourcePath = Path.Combine(project.ProjectFolderPath, "Source", module.BinaryModuleName + ".Gen.cpp");